gcloud_alpha_genomics_readgroupsets_export (1)
NAME
- gcloud alpha genomics readgroupsets export - exports a read group set to a BAM file in cloud storage
SYNOPSIS
-
gcloud alpha genomics readgroupsets export READ_GROUP_SET_ID --export-uri=EXPORT_URI [--reference-names=[REFERENCE_NAMES,...]] [GCLOUD_WIDE_FLAG ...]
DESCRIPTION
(ALPHA) Exports a read group set, optionally restricted by reference name,
POSITIONAL ARGUMENTS
-
- READ_GROUP_SET_ID
-
The ID of the read group set to export.
REQUIRED FLAGS
-
- --export-uri=EXPORT_URI
-
Google Cloud Storage URI to which the BAM file
(samtools.github.io/hts-specs/SAMv1.pdf should be exported.
OPTIONAL FLAGS
-
- --reference-names=[REFERENCE_NAMES,...]
-
Comma separated list of reference names to be exported from the given read group
set. Provide * to export unmapped reads. By default, all reads are exported.
GCLOUD WIDE FLAGS
These flags are available to all commands: --account, --configuration, --flags-file, --flatten, --format, --help, --log-http, --project, --quiet, --trace-token, --user-output-enabled, --verbosity. Run $ gcloud help for details.
NOTES
This command is currently in ALPHA and may change without notice. If this command fails with API permission errors despite specifying the right project, you will have to apply for early access and have your projects registered on the API whitelist to use it. To do so, contact Support at cloud.google.com/support